Getting Started

• Overview
• Dataset
• Setup environment
• Load the Allelic Frequency Matrix (AFM)
• AFM pre-processing
  • Cell Filtering
  • MT-SNVs filtering
  • Dimensionality reduction
  • (Optional) Filtered MT-SNVs space quality assessment
• Lineage inference
  • Mitochondrial phylogenies
  • Mitochondrial clones
  • (Optional) lineage inference evaluation
• Visualization
  • MT-SNVs selection
  • Lineage inference
• Summary
• Outlook