Welcome to MiTo’s Documentation!

This documentation is divided into two sections.

Main

• MiTo
• APIs
  • I/O
  • Preprocessing
  • Tools
  • Plotting
  • Utils

Tutorial

• Installation
  • Install mamba (or conda)
  • Clone MiTo repository
  • Reproduce MiTo conda environment
  • Activate environment and install MiTo
  • Verify installation
• Getting Started
  • Overview
  • Dataset
  • Setup environment
  • Load the Allelic Frequency Matrix (AFM)
  • AFM pre-processing
  • Lineage inference
  • Visualization
  • Summary
  • Outlook

Indices and tables

• Index

• Search Page